Alex Tong
Alex Tong
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Autoregressive Boltzmann Generators
Efficient sampling of molecular systems at thermodynamic equilibrium is a hallmark challenge in statistical physics. This challenge has …
Danyal Rehman
,
Charlie B. Tan
,
Yoshua Bengio
,
Joey Bose
,
Alex Tong
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OpenReview
MacroGuide: Topological Guidance for Macrocycle Generation
Alicja Maksymiuk
,
Alexandre Duplessis
,
Michael Bronstein
,
Alex Tong
,
Fernanda Duarte
,
İsmail Ceylan
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arXiv
Flow matching for generative modelling in bioinformatics and computational biology
Numerous problems in bioinformatics and computational biology can be framed as a task of learning a mapping from one state of a …
Alex Morehead
,
Lazar Atanackovic
,
Akshata Hegde
,
Yanli Wang
,
Frimpong Boadu
,
Joel Selvaraj
,
Alex Tong
,
Aditi S. Krishnapriyan
,
Jianlin Cheng
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OpenReview
Branched Schrödinger Bridge Matching
Predicting the intermediate trajectories between an initial and target distribution is a central problem in generative modeling. …
Sophia Tang
,
Yinuo Zhang
,
Alex Tong
,
Pranam Chatterjee
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Efficient Regression-Based Training of Normalizing Flows for Boltzmann Generators
Simulation-free training frameworks have been at the forefront of the generative modelling revolution in continuous spaces, leading to …
Danyal Rehman
,
Oscar Davis
,
Jiarui Lu
,
Jian Tang
,
Michael Bronstein
,
Yoshua Bengio
,
Alexander Tong
,
Avishek Joey Bose
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arXiv
URL
FALCON: Few-step Accurate Likelihoods for Continuous Flows
Scalable sampling of molecular states in thermodynamic equilibrium is a long-standing challenge in statistical physics. Boltzmann …
Danyal Rehman
,
Tara Akhound-Sadegh
,
Artem Gazizov
,
Yoshua Bengio
,
Alex Tong
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OXtal: An All-Atom Diffusion Model for Organic Crystal Structure Prediction
Accurately predicting experimentally-realizable 3D molecular crystal structures from their 2D chemical graphs is a long-standing open …
Emily Jin
*
,
Andrei Cristian Nica
*
,
Mikhail Galkin
,
Jarrid Rector-Brooks
,
Kin Long Kelvin Lee
,
Santiago Miret
,
Frances H. Arnold
,
Michael Bronstein
,
Avishek Joey Bose
,
Alex Tong
,
Chenghao Liu
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Blog
Planner Aware Path Learning in Diffusion Language Models Training
Diffusion language models have emerged as a powerful alternative to autoregressive models, enabling fast inference through flexible and …
Fred Zhangzhi Peng
*
,
Zachary Bezemek
*
,
Jarrid Rector-Brooks
,
Shuibai Zhang
,
Anru R. Zhang
,
Michael Bronstein
,
Avishek Joey Bose
*
,
Alex Tong
*
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Topological Flow Matching
Kacper Wyrwal
,
İsmail Ceylan
,
Alex Tong
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Code
Progressive Inference-Time Annealing of Diffusion Models for Sampling from Boltzmann Densities
Sampling efficiently from a target unnormalized probability density remains a core challenge, with relevance across countless …
Tara Akhound-Sadegh
*
,
Jungyoon Lee
*
,
Avishek Joey Bose
,
Valentin De Bortoli
,
Arnaud Doucet
,
Michael M. Bronstein
,
Dominique Beaini
,
Siamak Ravanbakhsh
,
Kirill Neklyudov
*
,
Alex Tong
*
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