Publications

Alexander Tong, Frederik Wenkel, Kincaid MacDonald, Smita Krishnaswamy, Guy Wolf (2020). Scattering Priors for Graph Neural Networks. DeepMath.

Egbert Castro, Andrew Benz, Alexander Tong, Guy Wolf, Smita Krishnaswamy (2020). Uncovering the Folding Landscape of RNA Secondary Structure with Deep Graph Embeddings. ICML 2020 GRLB Workshop.

Alexander Tong, Frederik Wenkel, Kincaid MacDonald, Smita Krishnaswamy, Guy Wolf (2020). Data-Driven Learning of Geometric Scattering Networks. Under Review.

Daniel B. Burkhardt, Jay S. Stanley, Alexander Tong, Ana Luisa Perdigoto, Scott A. Gigante, Kevan C. Herold, Guy Wolf, Antonio J. Giraldez, David van Dijk, Smita Krishnaswamy (2020). Quantifying the effect of experimental perturbations in single-cell RNA-sequencing data using graph signal processing. To appear in Nature Biotechnology.

Alexander Tong, Guy Wolf, Smita Krishnaswamy (2020). Fixing Bias in Reconstruction-based Anomaly Detection with Lipschitz Discriminators. In IEEE MLSP. Best Student Paper Award.

PDF Code Slides Video Yale Daily Article Best Paper Award

Egbert Castro, Andrew Benz, Alexander Tong, Guy Wolf, Smita Krishnaswamy (2020). Uncovering the Folding Landscape of RNA Secondary Structure with Deep Graph Embeddings. Under Review.

Alexander Tong, Jessie Huang, Guy Wolf, David van Dijk, Smita Krishnaswamy (2020). TrajectoryNet: A Dynamic Optimal Transport Network for Modeling Cellular Dynamics. In ICML.

Code Slides Video Arxiv ICML Page

Alexander Tong, Smita Krishnaswamy (2020). Interpolating Optimal Transport Barycenters of Patient Manifolds. ISMB.

Poster Slides Video

Alexander Tong, David van Dijk, Jay S. Stanley III, Matthew Amodio, Kristina Yim, Rebecca Muhle, James Noonan, Guy Wolf, Smita Krishnaswamy (2020). Interpretable Neuron Structuring with Graph Spectral Regularization. In IDA.

PDF Code Slides Video DOI

Alexander Tong, Jessie Huang, Guy Wolf, David van Dijk, Smita Krishnaswamy (2019). Modeling Cellular Dynamics with Continuous Normalizing Flows. NeurIPS LMRL Workshop.

David van Dijk, Daniel B. Burkhardt, Matthew Amodio, Alexander Tong, Guy Wolf, Smita Krishnaswamy (2019). Finding Archetypal Spaces Using Neural Networks. In IEEE Big Data.

PDF Code DOI Arxiv

Alexander Tong, David van Dijk, Jay S. Stanley III, Matthew Amodio, Kristina Yim, Rebecca Muhle, James Noonan, Guy Wolf, Smita Krishnaswamy (2019). Graph Spectral Regularization for Neural Network Interpretability. ICLR RLGM Workshop.

James Aspnes, Bernhard Haeupler, Alexander Tong, Philipp Woelfel (2018). Allocate-On-Use Space Complexity of Shared-Memory Algorithms. In DISC.